About
date
Mar 13, 2021
slug
about
status
Published
tags
summary
type
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Runze MA 「马润泽」
Short Bio
Right now I am a Ph.D. student at Shanghai Jiao Tong University supervised by Prof. Shuangjia Zheng. Before that, I received my M.S. in Artificial Intelligence and B.S. in Pharmacy from Sichuan University.
Research
I'm interested in AI for science, especially for applications of deep learning in biology, chemistry and drug discovery. I believe with the help of artificial intelligence, we can reshape the traditional paradigm of drug research and construct cutting-edge methods for the next generation of drug discovery.
Feel free to contact me if you have any questions :)
Publications
* means equal contribution.
Zhongmin Li, Runze Ma*, Jiahao Tan, Chengzi Tan, Shuangjia Zheng
arXiv 2025
Odin Zhang, Xujun Zhang, Haitao Lin, Cheng Tan, Qinghan Wang, Yuanle Mo, Qiantai Feng, Gang Du, Yuntao Yu, Zichang Jin, Ziyi You, Peicong Lin, Yijie Zhang, Yuyang Tao, Shicheng Chen, Jack Xiaoyu Chen, Chenqing Hua, Weibo Zhao, Runze Ma, Yunpeng Xia, Kejun Ying, Jun Li, Yundian Zeng, Lijun Lang, Peichen Pan, Hanqun Cao, Zihao Song, Bo Qiang, Jiaqi Wang, Pengfei Ji, Lei Bai, Jian Zhang, Chang-yu Hsieh, Pheng Ann Heng, Siqi Sun, Tingjun Hou, Shuangjia Zheng
arXiv 2025
GeoMHCII: Pan-Specific MHCII Peptide Interaction Prediction with Evolution-informed Geometric Deep Learning
Yaokun Ji, Runze Ma, Shuangjia Zheng
BIBM 2025
Zhongyue Zhang, Jiahua Rao, Jie Zhong, Weiqiang Bai, Dongxue Wang, Shaobo Ning, Lifeng Qiao, Sheng Xu, Runze Ma, Will Hua, Jack Xiaoyu Chen, Odin Zhang, Wei Lu, Hanyi Feng, He Yang, Xinchao Shi, Rui Li, Wanli Ouyang, Xinzhu Ma, Jiahao Wang, Jixian Zhang, Jia Duan, Siqi Sun, Jian Zhang, Shuangjia Zheng
arXiv 2025
Zhongyue Zhang, Zijie Qiu, Yingcheng Wu, Shuya Li, Dingyan Wang, Zhuomin Zhou, Duo An, Yuhan Chen, Yu Li, Yongbo Wang, Chubin Ou, Zichen Wang, Jack Xiaoyu Chen, Bo Zhang, Yusong Hu, Wenxin Zhang, Zhijian Wei, Runze Ma, Qingwu Liu, Bo Dong, Yuexi He, Qiantai Feng, Lei Bai, Qiang Gao, Siqi Sun, Shuangjia Zheng
bioRxiv 2025
Integrating Millions of Years of Evolutionary Information into Protein Structure Models for Function Prediction
Runze Ma*, Chengxin He*, Zhongyue Zhang, Huiru Zheng, Lei Duan
BMC Bioinformatics
Yanjie Huang, Bibi Zhang, Jack X. Chen, Runze Ma, Zhongyue Zhang, Xianjun Chen, Yi Yang, Shuangjia Zheng
bioRxiv 2025
Runze Ma, Zhongyue Zhang, Zichen Wang, Chenqing Hua, Zhuomin Zhou, Fenglei Cao, Jiahua Rao, Shuangjia Zheng
NeurIPS 2025
Zhongyue Zhang*, Runze Ma*, Yanjie Huang, Shuangjia Zheng
arXiv 2025
Runze Ma, Chengxin He, Huiru Zheng, Xinye Wang, Haiying Wang, Yidan Zhang, Lei Duan
BIBM 2024
Junchen Wang, Lei Duan,Runze Ma, Yidan Zhang, Zhaohang Luo
DASFAA 2023
Chengxin He, Yuening Qu, Jin Yin, Zhenjiang Zhao, Runze Ma, Lei Duan
Methods (2023)
Runze Ma, Yidan Zhang , Xinye Wang, Zhenyang Yu, Lei Duan
CIKM 2022
Haiqiong Luo, Yongkui Zhang, Yi Xie, Yulin Li,Man Qi, Runze Ma, Shihao Yang, Yabo Wang,
Bioresource Technology (2019)
Last Updated at Jun. 2025.